repositories
Open-source software and pipelines I develop and maintain.
NBISweden/DNAharvester
A Nextflow pipeline for analysing highly degraded DNA from ancient and historical specimens, with competitive and adaptive mapping, reference-bias evaluation, and subworkflows for mitogenome assembly, taxonomy, sex determination, and variant calling.
Nextflow SNP2NET
Creates an interactive circular phylogenetic network from SNP data using Neighbor-Joining.
Python iterative_mapping
Nextflow pipeline for iterative mapping of nuclear genomes.
Nextflow dna-capture-probes-design
Scripts to design hybridization probes to capture genome-wide nuclear SNPs, missense mutations, and indels.
Python AdaptClean
Removes residual adapter sequences for single-end reads.
C++